| Package | hl7.fhir.uv.xver |
| Type | StructureMap |
| Id | Id |
| FHIR Version | R5 |
| Source | http://hl7.org/fhir/extensions/https://build.fhir.org/ig/HL7/fhir-cross-version/StructureMap-MolecularSequence5to4B.html |
| Url | http://hl7.org/fhir/StructureMap/MolecularSequence5to4B |
| Version | 0.1.0 |
| Status | active |
| Date | 2024-02-22T03:16:50+00:00 |
| Name | MolecularSequence5to4B |
| Title | MolecularSequence Transforms: R5 to R4B |
| Experimental | False |
| Realm | uv |
| Authority | hl7 |
| Description | MolecularSequenceTransformsR5toR4B |
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Note: links and images are rebased to the (stated) source
/// url = 'http://hl7.org/fhir/StructureMap/MolecularSequence5to4B' /// name = 'MolecularSequence5to4B' /// title = 'MolecularSequence Transforms: R5 to R4B' /// status = 'active' uses "http://hl7.org/fhir/5.0/MolecularSequence" alias MolecularSequenceR5 as source uses "http://hl7.org/fhir/4.0/MolecularSequence" alias MolecularSequenceR4B as target imports "http://hl7.org/fhir/StructureMap/*5to4B" group MolecularSequence(source src : MolecularSequenceR5, target tgt : MolecularSequenceR4B) extends DomainResource <<type+>> { src.identifier -> tgt.identifier; src.type as v -> tgt.type = translate(v, 'http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R5toR4', 'code'); src.subject -> tgt.patient; src.specimen -> tgt.specimen; src.device -> tgt.device; src.performer -> tgt.performer; src.relative as s -> tgt.referenceSeq as t then MolecularSequenceReferenceSeq(s, t); src.relative as s -> tgt.variant as t then MolecularSequenceVariant(s, t); } group MolecularSequenceReferenceSeq(source src, target tgt) extends BackboneElement { src.startingSequence as s -> tgt then { s.chromosome as s where code = 'LA21254-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '1', tcc.display = 'chromosome 1'; s.chromosome as s where code = 'LA21255-7' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '2', tcc.display = 'chromosome 2'; s.chromosome as s where code = 'LA21256-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '3', tcc.display = 'chromosome 3'; s.chromosome as s where code = 'LA21257-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '4', tcc.display = 'chromosome 4'; s.chromosome as s where code = 'LA21258-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '5', tcc.display = 'chromosome 5'; s.chromosome as s where code = 'LA21259-9' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '6', tcc.display = 'chromosome 6'; s.chromosome as s where code = 'LA21260-7' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '7', tcc.display = 'chromosome 7'; s.chromosome as s where code = 'LA21261-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '8', tcc.display = 'chromosome 8'; s.chromosome as s where code = 'LA21262-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '9', tcc.display = 'chromosome 9'; s.chromosome as s where code = 'LA21263-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '10', tcc.display = 'chromosome 10'; s.chromosome as s where code = 'LA21264-9' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '11', tcc.display = 'chromosome 11'; s.chromosome as s where code = 'LA21265-6' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '12', tcc.display = 'chromosome 12'; s.chromosome as s where code = 'LA21266-4' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '13', tcc.display = 'chromosome 13'; s.chromosome as s where code = 'LA21267-2' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '14', tcc.display = 'chromosome 14'; s.chromosome as s where code = 'LA21268-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '15', tcc.display = 'chromosome 15'; s.chromosome as s where code = 'LA21269-8' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '16', tcc.display = 'chromosome 16'; s.chromosome as s where code = 'LA21270-6' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '17', tcc.display = 'chromosome 17'; s.chromosome as s where code = 'LA21271-4' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '18', tcc.display = 'chromosome 18'; s.chromosome as s where code = 'LA21272-2' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '19', tcc.display = 'chromosome 19'; s.chromosome as s where code = 'LA21273-0' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '20', tcc.display = 'chromosome 20'; s.chromosome as s where code = 'LA21274-8' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '21', tcc.display = 'chromosome 21'; s.chromosome as s where code = 'LA21275-5' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = '22', tcc.display = 'chromosome 22'; s.chromosome as s where code = 'LA21276-3' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = 'X', tcc.display = 'chromosome X'; s.chromosome as s where code = 'LA21277-1' -> tgt.chromosome = create('CodeableConcept') as tc, tc.coding = create('Coding') as tcc, tcc.system = 'http://terminology.hl7.org/CodeSystem/chromosome-human', tcc.code = 'Y', tcc.display = 'chromosome Y'; s.sequence : CodeableConcept -> tgt.referenceSeqId; s.sequence : Reference -> tgt.referenceSeqPointer; s.sequence : string -> tgt.referenceSeqString; s.windowStart -> tgt.windowStart; s.windowEnd -> tgt.windowEnd; s.orientation as v -> tgt.orientation = translate(v, '#orientationType', 'code'); s.strand as v -> tgt.strand = translate(v, '#strandType', 'code'); }; } group MolecularSequenceVariant(source src, target tgt) extends BackboneElement { src.edit as s -> tgt then { s.start -> tgt.start; s.end -> tgt.end; s.replacementSequence -> tgt.observedAllele; s.replacedSequence -> tgt.referenceAllele; }; }
FHIR{
"resourceType" : "StructureMap",
"id" : "MolecularSequence5to4B",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><pre class=\"fml\">\r\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/StructureMap/MolecularSequence5to4B'</span>\r\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'MolecularSequence5to4B'</span>\r\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'MolecularSequence Transforms: R5 to R4B'</span>\r\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'active'</span>\r\n\r\n<b>uses</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/5.0/MolecularSequence<span style=\"color: navy\">" </span><b>alias </b>MolecularSequenceR5 <b>as </b><b>source</b>\r\n<b>uses</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/4.0/MolecularSequence<span style=\"color: navy\">" </span><b>alias </b>MolecularSequenceR4B <b>as </b><b>target</b>\r\n\r\n<b>imports</b><span style=\"color: navy\"> "</span>http://hl7.org/fhir/StructureMap/*5to4B<span style=\"color: navy\">"\r\n</span>\r\n<b>group </b>MolecularSequence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>MolecularSequenceR5, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>MolecularSequenceR4B<span style=\"color: navy\">)</span><b> extends </b>DomainResource<b> <<type+>></b><span style=\"color: navy\"> {\r\n</span> src.identifier<span style=\"color: navy\"><b> -> </b></span>tgt.identifier<span style=\"color: navy\">;</span>\r\n src.type<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>tgt.type = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'http://hl7.org/fhir/ConceptMap/MolecularSequence.type-R5toR4'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.subject<span style=\"color: navy\"><b> -> </b></span>tgt.patient<span style=\"color: navy\">;</span>\r\n src.specimen<span style=\"color: navy\"><b> -> </b></span>tgt.specimen<span style=\"color: navy\">;</span>\r\n src.device<span style=\"color: navy\"><b> -> </b></span>tgt.device<span style=\"color: navy\">;</span>\r\n src.performer<span style=\"color: navy\"><b> -> </b></span>tgt.performer<span style=\"color: navy\">;</span>\r\n src.relative<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeq<b> as </b><span style=\"color: maroon\">t</span><b> then </b>MolecularSequenceReferenceSeq<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n src.relative<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span>tgt.variant<b> as </b><span style=\"color: maroon\">t</span><b> then </b>MolecularSequenceVariant<span style=\"color: navy\">(</span><span style=\"color: maroon\">s</span><span style=\"color: navy\">, </span><span style=\"color: maroon\">t</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>MolecularSequenceReferenceSeq<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.startingSequence<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21254-0'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'1'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 1'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21255-7'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'2'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 2'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21256-5'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'3'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 3'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21257-3'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'4'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 4'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21258-1'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'5'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 5'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21259-9'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'6'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 6'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21260-7'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'7'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 7'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21261-5'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'8'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 8'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21262-3'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'9'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 9'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21263-1'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'10'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 10'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21264-9'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'11'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 11'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21265-6'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'12'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 12'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21266-4'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'13'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 13'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21267-2'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'14'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 14'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21268-0'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'15'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 15'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21269-8'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'16'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 16'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21270-6'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'17'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 17'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21271-4'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'18'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 18'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21272-2'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'19'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 19'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21273-0'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'20'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 20'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21274-8'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'21'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 21'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21275-5'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'22'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome 22'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21276-3'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'X'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome X'</span><span style=\"color: navy\">;</span>\r\n s.chromosome<b> as </b><span style=\"color: maroon\">s</span><b> where </b>code = 'LA21277-1'<span style=\"color: navy\"><b> -> </b></span> tgt.chromosome = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'CodeableConcept'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tc</span><span style=\"color: navy\">, </span> tc.coding = <b>create</b><span style=\"color: navy\">(</span><span style=\"color: blue\">'Coding'</span><span style=\"color: navy\">)</span><b> as </b><span style=\"color: maroon\">tcc</span><span style=\"color: navy\">, </span> tcc.system = <span style=\"color: blue\">'http://terminology.hl7.org/CodeSystem/chromosome-human'</span><span style=\"color: navy\">, </span> tcc.code = <span style=\"color: blue\">'Y'</span><span style=\"color: navy\">, </span> tcc.display = <span style=\"color: blue\">'chromosome Y'</span><span style=\"color: navy\">;</span>\r\n s.sequence<span style=\"color: navy\"> : </span>CodeableConcept<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqId<span style=\"color: navy\">;</span>\r\n s.sequence<span style=\"color: navy\"> : </span>Reference<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqPointer<span style=\"color: navy\">;</span>\r\n s.sequence<span style=\"color: navy\"> : </span>string<span style=\"color: navy\"><b> -> </b></span>tgt.referenceSeqString<span style=\"color: navy\">;</span>\r\n s.windowStart<span style=\"color: navy\"><b> -> </b></span>tgt.windowStart<span style=\"color: navy\">;</span>\r\n s.windowEnd<span style=\"color: navy\"><b> -> </b></span>tgt.windowEnd<span style=\"color: navy\">;</span>\r\n s.orientation<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>tgt.orientation = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'#orientationType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n s.strand<b> as </b><span style=\"color: maroon\">v</span><span style=\"color: navy\"><b> -> </b></span>tgt.strand = <b>translate</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">v</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'#strandType'</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'code'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span><b>group </b>MolecularSequenceVariant<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span>, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\">)</span><b> extends </b>BackboneElement<span style=\"color: navy\"> {\r\n</span> src.edit<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {\r\n</span> s.start<span style=\"color: navy\"><b> -> </b></span>tgt.start<span style=\"color: navy\">;</span>\r\n s.end<span style=\"color: navy\"><b> -> </b></span>tgt.end<span style=\"color: navy\">;</span>\r\n s.replacementSequence<span style=\"color: navy\"><b> -> </b></span>tgt.observedAllele<span style=\"color: navy\">;</span>\r\n s.replacedSequence<span style=\"color: navy\"><b> -> </b></span>tgt.referenceAllele<span style=\"color: navy\">;</span>\r\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>\r\n<span style=\"color: navy\">}\r\n\r\n</span></pre></div>"
},
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{
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"url" : "http://hl7.org/fhir/StructureMap/MolecularSequence5to4B",
"version" : "0.1.0",
"name" : "MolecularSequence5to4B",
"title" : "MolecularSequence Transforms: R5 to R4B",
"status" : "active",
"date" : "2024-02-22T03:16:50+00:00",
"publisher" : "HL7 International / FHIR Infrastructure",
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"transform" : "copy",
"parameter" : [
{
"valueString" : "http://terminology.hl7.org/CodeSystem/chromosome-human"
}
]
},
{
"context" : "tcc",
"element" : "code",
"transform" : "copy",
"parameter" : [
{
"valueString" : "18"
}
]
},
{
"context" : "tcc",
"element" : "display",
"transform" : "copy",
"parameter" : [
{
"valueString" : "chromosome 18"
}
]
}
]
},
{
"name" : "chromosome",
"source" : [
{
"context" : "s",
&quo "target" : [
{
"context" : "tgt",
"element" : "observedAllele",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
},
{
"name" : "replacedSequence",
"source" : [
{
"context" : "s",
"element" : "replacedSequence",
"variable" : "vvv"
}
],
"target" : [
{
"context" : "tgt",
"element" : "referenceAllele",
"variable" : "vvv",
"transform" : "create"
}
],
"dependent" : [
{
"name" : "DefaultMappingGroupAnonymousAlias",
"parameter" : [
{
"valueId" : "vvv"
},
{
"valueId" : "vvv"
}
]
}
]
}
]
}
]
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.